Pakket: beagle (5.1-200518+dfsg-1)

Verwijzigingen voor beagle

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Homepage [faculty.washington.edu]

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Genotype calling, genotype phasing and imputation of ungenotyped markers

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::java, interface::commandline, Role: Program, Purpose: Analysing

Andere aan beagle gerelateerde pakketten

depends

recommends

suggests

enhances

dep: default-jre

Standard Java or Java compatible Runtime

of java11-runtime

virtueel pakket geboden door default-jre, openjdk-11-jre, openjdk-17-jre
dep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats

sug: beagle-doc

Documentation for Beagle

beagle downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	298,5 kB	622,0 kB	[overzicht]