[ Bron: libfastahack ]
Pakket: fastahack (1.0.0+dfsg-7)
Verwijzigingen voor fastahack
Debian bronnen:
Het bronpakket libfastahack downloaden:
- [libfastahack_1.0.0+dfsg-7.dsc]
- [libfastahack_1.0.0+dfsg.orig.tar.xz]
- [libfastahack_1.0.0+dfsg-7.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Andere aan fastahack gerelateerde pakketten
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- dep: libc6 (>= 2.4)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 3.0)
- GCC support bibliotheek
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3