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Pakket: libfastahack0 (1.0.0+dfsg-7)

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library for indexing and sequence extraction from FASTA files (lib)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features: 

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 25,0 kB83,0 kB [overzicht]
arm64 23,1 kB75,0 kB [overzicht]
armel 23,3 kB69,0 kB [overzicht]
armhf 23,7 kB57,0 kB [overzicht]
i386 27,4 kB81,0 kB [overzicht]
mips64el 24,3 kB82,0 kB [overzicht]
mipsel 25,0 kB79,0 kB [overzicht]
ppc64el 26,3 kB87,0 kB [overzicht]
s390x 22,8 kB77,0 kB [overzicht]