[ Bron: trnascan-se ]
Pakket: trnascan-se (2.0.7+ds-1) [non-free]
Verwijzigingen voor trnascan-se
Debian bronnen:
Het bronpakket trnascan-se downloaden:
- [trnascan-se_2.0.7+ds-1.dsc]
- [trnascan-se_2.0.7+ds.orig.tar.gz]
- [trnascan-se_2.0.7+ds-1.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [lowelab.ucsc.edu]
Vergelijkbare pakketten:
detection of transfer RNA genes in genomic sequence
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
Andere aan trnascan-se gerelateerde pakketten
|
|
|
|
-
- dep: infernal
- inference of RNA secondary structural alignments
-
- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- dep: trnascan-se-common (= 2.0.7+ds-1)
- detection of transfer RNA genes in genomic sequence (common files)