[ Bron: r-bioc-grohmm ]
Pakket: r-bioc-grohmm (1.24.0-1)
Verwijzigingen voor r-bioc-grohmm
Debian bronnen:
Het bronpakket r-bioc-grohmm downloaden:
- [r-bioc-grohmm_1.24.0-1.dsc]
- [r-bioc-grohmm_1.24.0.orig.tar.gz]
- [r-bioc-grohmm_1.24.0-1.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [bioconductor.org]
Vergelijkbare pakketten:
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
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