[ Bron: canu ]
Pakket: canu (2.0+dfsg-1)
Verwijzigingen voor canu
Debian bronnen:
Het bronpakket canu downloaden:
Beheerder:
Externe bronnen:
- Homepage [canu.readthedocs.org]
Vergelijkbare pakketten:
single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
* Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences
Andere aan canu gerelateerde pakketten
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- dep: gnuplot
- Command-line driven interactive plotting program.
Ook een virtueel pakket geboden door: gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libfilesys-df-perl
- Module to obtain filesystem disk space information
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- dep: libgcc-s1 (>= 3.5)
- GCC support bibliotheek
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mhap (>= 2.1.3)
- locality-sensitive hashing to detect long-read overlaps
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: nanopolish
- consensus caller for nanopore sequencing data
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- sug: pbgenomicconsensus
- Pakket niet beschikbaar