[ Bron: libvcflib ]
Pakket: libvcflib-tools (1.0.2+dfsg-2)
Verwijzigingen voor libvcflib-tools
Debian bronnen:
Het bronpakket libvcflib downloaden:
- [libvcflib_1.0.2+dfsg-2.dsc]
- [libvcflib_1.0.2+dfsg.orig.tar.xz]
- [libvcflib_1.0.2+dfsg-2.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.
vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:
* an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files.
This package contains several tools using the library.
Andere aan libvcflib-tools gerelateerde pakketten
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- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
-
- dep: libfastahack0 (>= 0.0+git20160702.bbc645f+dfsg-5~)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 3.0)
- GCC support bibliotheek
-
- dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
- determine similar regions between two strings or genomic sequences (lib)
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: libtabixpp0 (>= 1.0.0)
- C++ wrapper to tabix indexer
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- dep: libvcflib1 (>= 1.0.2+dfsg)
- C++ library for parsing and manipulating VCF files
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: r-base-core
- GNU R core of statistical computation and graphics system
-
- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-gridbase
- GNU R Integration of base and grid graphics
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- dep: r-cran-plyr
- tools for splitting, applying and combining data
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- sug: r-cran-pracma
- practical numerical math functions for GNU R