[ Bron: sga ]
Pakket: sga (0.10.15-5)
Verwijzigingen voor sga
Debian bronnen:
Het bronpakket sga downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Michael R. Crusoe (QA-pagina)
- Andreas Tille (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Andere aan sga gerelateerde pakketten
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.29)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc1 (>= 1:3.0)
- Pakket niet beschikbaar
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- compressiebibliotheek - programma's
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- rec: abyss (>= 2.0.2-1)
- de novo, parallel, sequence assembler for short reads