Pakket: miniasm (0.3+dfsg-4)

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Homepage [github.com]

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ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Andere aan miniasm gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: zlib1g (>= 1:1.1.4)

compressiebibliotheek - programma's

rec: minimap

tool for approximate mapping of long biosequences such as DNA reads

miniasm downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	29,2 kB	71,0 kB	[overzicht]
arm64	26,4 kB	82,0 kB	[overzicht]
armel	27,7 kB	82,0 kB	[overzicht]
armhf	26,3 kB	82,0 kB	[overzicht]
i386	31,2 kB	78,0 kB	[overzicht]
mips64el	29,7 kB	86,0 kB	[overzicht]
mipsel	29,5 kB	85,0 kB	[overzicht]
ppc64el	31,9 kB	83,0 kB	[overzicht]
s390x	28,4 kB	70,0 kB	[overzicht]