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Pakket: libssw0 (1.1-13)

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fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 19,2 kB55,0 kB [overzicht]
arm64 18,1 kB51,0 kB [overzicht]
armel 20,5 kB59,0 kB [overzicht]
armhf 20,7 kB51,0 kB [overzicht]
i386 26,5 kB83,0 kB [overzicht]
mips64el 26,1 kB77,0 kB [overzicht]
mipsel 25,7 kB72,0 kB [overzicht]
ppc64el 19,4 kB83,0 kB [overzicht]
s390x 23,2 kB71,0 kB [overzicht]