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Pakket: examl (3.0.22-3 en anderen)

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Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

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Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 3.0.22-3+b2 928,7 kB5.930,0 kB [overzicht]
arm64 3.0.22-3+b2 780,3 kB1.664,0 kB [overzicht]
armel 3.0.22-3+b2 798,2 kB1.881,0 kB [overzicht]
armhf 3.0.22-3+b2 785,7 kB1.513,0 kB [overzicht]
i386 3.0.22-3+b2 1.087,1 kB7.008,0 kB [overzicht]
mips64el 3.0.22-3+b2 815,5 kB1.812,0 kB [overzicht]
mipsel 3.0.22-3+b2 828,1 kB1.934,0 kB [overzicht]
ppc64el 3.0.22-3+b2 845,8 kB1.920,0 kB [overzicht]
s390x 3.0.22-3+b2 816,6 kB1.996,0 kB [overzicht]