[ Bron: stringtie ]
Pakket: stringtie (2.2.1+ds-2)
Verwijzigingen voor stringtie
Debian bronnen:
Het bronpakket stringtie downloaden:
- [stringtie_2.2.1+ds-2.dsc]
- [stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz]
- [stringtie_2.2.1+ds.orig.tar.xz]
- [stringtie_2.2.1+ds-2.debian.tar.xz]
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Steffen Moeller (QA-pagina)
- Nilesh Patra (QA-pagina)
Externe bronnen:
- Homepage [ccb.jhu.edu]
Vergelijkbare pakketten:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Andere aan stringtie gerelateerde pakketten
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- dep: libc6 (>= 2.33)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libhts3 (>= 1.13)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- rec: stringtie-examples
- Pakket niet beschikbaar
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq