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/usr/bin/khmer
/usr/lib/khmer/bin/abundance-dist-single.py
/usr/lib/khmer/bin/abundance-dist.py
/usr/lib/khmer/bin/annotate-partitions.py
/usr/lib/khmer/bin/count-median.py
/usr/lib/khmer/bin/do-partition.py
/usr/lib/khmer/bin/extract-long-sequences.py
/usr/lib/khmer/bin/extract-paired-reads.py
/usr/lib/khmer/bin/extract-partitions.py
/usr/lib/khmer/bin/fastq-to-fasta.py
/usr/lib/khmer/bin/filter-abund-single.py
/usr/lib/khmer/bin/filter-abund.py
/usr/lib/khmer/bin/filter-stoptags.py
/usr/lib/khmer/bin/find-knots.py
/usr/lib/khmer/bin/interleave-reads.py
/usr/lib/khmer/bin/load-graph.py
/usr/lib/khmer/bin/load-into-counting.py
/usr/lib/khmer/bin/make-initial-stoptags.py
/usr/lib/khmer/bin/merge-partitions.py
/usr/lib/khmer/bin/normalize-by-median.py
/usr/lib/khmer/bin/partition-graph.py
/usr/lib/khmer/bin/readstats.py
/usr/lib/khmer/bin/sample-reads-randomly.py
/usr/lib/khmer/bin/split-paired-reads.py
/usr/lib/khmer/bin/trim-low-abund.py
/usr/lib/khmer/bin/unique-kmers.py
/usr/lib/python3/dist-packages/khmer-2.1.2.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/khmer-2.1.2.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/khmer-2.1.2.egg-info/not-zip-safe
/usr/lib/python3/dist-packages/khmer-2.1.2.egg-info/requires.txt
/usr/lib/python3/dist-packages/khmer-2.1.2.egg-info/top_level.txt
/usr/lib/python3/dist-packages/khmer/__init__.py
/usr/lib/python3/dist-packages/khmer/_khmer.cpython-39-ia64-linux-gnu.so
/usr/lib/python3/dist-packages/khmer/_oxli/__init__.py
/usr/lib/python3/dist-packages/khmer/_oxli/assembly.cpp
/usr/lib/python3/dist-packages/khmer/_oxli/assembly.cpython-39-ia64-linux-gnu.so
/usr/lib/python3/dist-packages/khmer/_oxli/assembly.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/assembly.pyx
/usr/lib/python3/dist-packages/khmer/_oxli/graphs.cpp
/usr/lib/python3/dist-packages/khmer/_oxli/graphs.cpython-39-ia64-linux-gnu.so
/usr/lib/python3/dist-packages/khmer/_oxli/graphs.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/graphs.pyx
/usr/lib/python3/dist-packages/khmer/_oxli/hashing.cpp
/usr/lib/python3/dist-packages/khmer/_oxli/hashing.cpython-39-ia64-linux-gnu.so
/usr/lib/python3/dist-packages/khmer/_oxli/hashing.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/hashing.pyx
/usr/lib/python3/dist-packages/khmer/_oxli/hllcounter.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/oxli_types.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/parsing.cpp
/usr/lib/python3/dist-packages/khmer/_oxli/parsing.cpython-39-ia64-linux-gnu.so
/usr/lib/python3/dist-packages/khmer/_oxli/parsing.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/parsing.pyx
/usr/lib/python3/dist-packages/khmer/_oxli/traversal.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/utils.cpp
/usr/lib/python3/dist-packages/khmer/_oxli/utils.cpython-39-ia64-linux-gnu.so
/usr/lib/python3/dist-packages/khmer/_oxli/utils.pxd
/usr/lib/python3/dist-packages/khmer/_oxli/utils.pyx
/usr/lib/python3/dist-packages/khmer/_version.py
/usr/lib/python3/dist-packages/khmer/kfile.py
/usr/lib/python3/dist-packages/khmer/khmer_args.py
/usr/lib/python3/dist-packages/khmer/khmer_logger.py
/usr/lib/python3/dist-packages/khmer/tests/__init__.py
/usr/lib/python3/dist-packages/khmer/tests/graph_features.py
/usr/lib/python3/dist-packages/khmer/tests/khmer_tst_utils.py
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.bz2
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.gz
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.bz2
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.gz
/usr/lib/python3/dist-packages/khmer/tests/test-data/README.rst
/usr/lib/python3/dist-packages/khmer/tests/test-data/all-A.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k12.ct
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k12.ht
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k32.stoptags
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k32.tagset
/usr/lib/python3/dist-packages/khmer/tests/test-data/banding-reads.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/biglump-random-20-a.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/bogus.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/casava_18-pe.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/combine_parts_1.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/dn-test-all-paired-all-keep.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/dn-test-none-paired.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/dn-test-some-paired-all-keep.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file
/usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2
/usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz
/usr/lib/python3/dist-packages/khmer/tests/test-data/fakelump.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/fakelump.fa.stoptags.txt
/usr/lib/python3/dist-packages/khmer/tests/test-data/filter-test-A.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/filter-test-B.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k32.stoptags
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k32.tagset
/usr/lib/python3/dist-packages/khmer/tests/test-data/multi-output.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/normC20k20.ct
/usr/lib/python3/dist-packages/khmer/tests/test-data/old-style-format-w-comments.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.1
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.badleft
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.badright
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.paired_bad
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken2.fq.1
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken2.fq.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken3.fq.1
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken3.fq.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken4.fq.1
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken4.fq.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed-2.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed-broken.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed-witherror.fa.pe
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fa.pe
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fa.se
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fq.pe
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fq.se
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-slash1.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-slash1.fq.1
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-slash1.fq.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fa.1
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fa.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fq.1
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fq.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.malformat.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.malformat.fq.2
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired_one.base.dif.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-X2.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.even.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.part
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.odd.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-b.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-31-c.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/readaligner-default.json
/usr/lib/python3/dist-packages/khmer/tests/test-data/readaligner-k12.json
/usr/lib/python3/dist-packages/khmer/tests/test-data/real-partition-small.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/real-partition-tiny.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/simple-genome-reads.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/simple-genome.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/single-read.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/single-read.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.paired.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.paired2.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-3.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-impaired.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-paired.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-paired.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-error-reads.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-fastq-n-reads.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-fastq-reads.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-fastq-reads.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-filter-abund-Ns.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-graph.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-graph2.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-graph5.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-labels.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-large.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-multi.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-output-partitions.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-overlap1.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-overlap2.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-reads.fa
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/usr/lib/python3/dist-packages/khmer/tests/test-data/test-sweep-contigs.fp
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/usr/lib/python3/dist-packages/khmer/tests/test-data/test-transcript.fa
/usr/lib/python3/dist-packages/khmer/tests/test-data/truncated.fq
/usr/lib/python3/dist-packages/khmer/tests/test-data/unclean-reads.fastq
/usr/lib/python3/dist-packages/khmer/tests/test-data/valid-read-testing.fq
/usr/lib/python3/dist-packages/khmer/tests/test_banding.py
/usr/lib/python3/dist-packages/khmer/tests/test_countgraph.py
/usr/lib/python3/dist-packages/khmer/tests/test_counting_single.py
/usr/lib/python3/dist-packages/khmer/tests/test_counttable.py
/usr/lib/python3/dist-packages/khmer/tests/test_cpython_hierarchy.py
/usr/lib/python3/dist-packages/khmer/tests/test_cython_assembly.py
/usr/lib/python3/dist-packages/khmer/tests/test_cython_parsing.py
/usr/lib/python3/dist-packages/khmer/tests/test_filter_abund.py
/usr/lib/python3/dist-packages/khmer/tests/test_functions.py
/usr/lib/python3/dist-packages/khmer/tests/test_graph.py
/usr/lib/python3/dist-packages/khmer/tests/test_hashset.py
/usr/lib/python3/dist-packages/khmer/tests/test_hll.py
/usr/lib/python3/dist-packages/khmer/tests/test_labelhash.py
/usr/lib/python3/dist-packages/khmer/tests/test_lump.py
/usr/lib/python3/dist-packages/khmer/tests/test_nibblestorage.py
/usr/lib/python3/dist-packages/khmer/tests/test_nodegraph.py
/usr/lib/python3/dist-packages/khmer/tests/test_normalize_by_median.py
/usr/lib/python3/dist-packages/khmer/tests/test_oxli_functions.py
/usr/lib/python3/dist-packages/khmer/tests/test_read_aligner.py
/usr/lib/python3/dist-packages/khmer/tests/test_read_handling.py
/usr/lib/python3/dist-packages/khmer/tests/test_read_parsers.py
/usr/lib/python3/dist-packages/khmer/tests/test_sandbox_scripts.py
/usr/lib/python3/dist-packages/khmer/tests/test_script_arguments.py
/usr/lib/python3/dist-packages/khmer/tests/test_script_output.py
/usr/lib/python3/dist-packages/khmer/tests/test_scripts.py
/usr/lib/python3/dist-packages/khmer/tests/test_sequence_validation.py
/usr/lib/python3/dist-packages/khmer/tests/test_streaming_io.py
/usr/lib/python3/dist-packages/khmer/tests/test_subset_graph.py
/usr/lib/python3/dist-packages/khmer/tests/test_tabletype.py
/usr/lib/python3/dist-packages/khmer/tests/test_threaded_sequence_processor.py
/usr/lib/python3/dist-packages/khmer/tests/test_version.py
/usr/lib/python3/dist-packages/khmer/thread_utils.py
/usr/lib/python3/dist-packages/khmer/trimming.py
/usr/lib/python3/dist-packages/khmer/utils.py
/usr/lib/python3/dist-packages/oxli/__init__.py
/usr/lib/python3/dist-packages/oxli/build_graph.py
/usr/lib/python3/dist-packages/oxli/functions.py
/usr/lib/python3/dist-packages/oxli/partition.py
/usr/share/doc/khmer/changelog.Debian.gz
/usr/share/doc/khmer/changelog.gz
/usr/share/doc/khmer/copyright
/usr/share/lintian/overrides/khmer
/usr/share/man/man1/khmer.1.gz
/usr/share/metainfo/khmer.metainfo.xml
/usr/share/python3/runtime.d/khmer.rtupdate