[ ソース: tiddit ]
パッケージ: tiddit (3.6.1+dfsg-1 など)
structural variant calling
TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.
TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.
その他の tiddit 関連パッケージ
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- dep: libc6 (>= 2.17)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: python3
- 対話式の高レベルオブジェクト指向言語 (デフォルト python3 バージョン)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.11~)
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- dep: python3-joblib
- tools to provide lightweight pipelining in Python
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)