[ ソース: libbio-db-gff-perl ]
パッケージ: libbio-db-gff-perl (1.7.4-1)
libbio-db-gff-perl に関するリンク
Debian の資源:
libbio-db-gff-perl ソースパッケージをダウンロード:
- [libbio-db-gff-perl_1.7.4-1.dsc]
- [libbio-db-gff-perl_1.7.4.orig.tar.gz]
- [libbio-db-gff-perl_1.7.4-1.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [metacpan.org]
類似のパッケージ:
Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators.
The following operations are supported by this module:
- retrieving a segment of sequence based on the ID of a landmark
- retrieving the DNA from that segment
- finding all annotations that overlap with the segment
- finding all annotations that are completely contained within thesegment
- retrieving all annotations of a particular type, either within asegment, or globally
- conversion from absolute to relative coordinates and back again,using any arbitrary landmark for the relative coordinates
- using a sequence segment to create new segments based on relativeoffsets
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- Larry Wall 作の実用的な抽出とレポート用の言語