[ ソース: r-bioc-megadepth ]
パッケージ: r-bioc-megadepth (1.8.0+ds-1)
r-bioc-megadepth に関するリンク
Debian の資源:
r-bioc-megadepth ソースパッケージをダウンロード:
- [r-bioc-megadepth_1.8.0+ds-1.dsc]
- [r-bioc-megadepth_1.8.0+ds.orig.tar.xz]
- [r-bioc-megadepth_1.8.0+ds-1.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [bioconductor.org]
類似のパッケージ:
BioCOnductor BigWig and BAM related utilities
This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.
その他の r-bioc-megadepth 関連パッケージ
|
|
|
|
-
- dep: megadepth
- computes coverage from BigWig and BAM sequencing files
-
- dep: r-api-4.0
- 以下のパッケージによって提供される仮想パッケージです: r-base-core
-
- dep: r-api-bioc-3.16
- 以下のパッケージによって提供される仮想パッケージです: r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.2.2.20221110-1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-cran-cmdfun
- GNI R framework for building interfaces to shell commands
-
- dep: r-cran-dplyr
- GNU R grammar of data manipulation
-
- dep: r-cran-fs
- GNU R cross-platform file system operations
-
- dep: r-cran-magrittr
- GNU R forward-pipe operator
-
- dep: r-cran-readr
- GNU R package to read rectangular text data
-
- dep: r-cran-xfun
- miscellaneous GNU R functions by 'Yihui Xie'
-
- rec: r-cran-testthat
- GNU R testsuite
-
- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- sug: r-cran-covr
- test coverage for GNU R packages
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- sug: r-cran-sessioninfo
- R Session Information