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[ Source: libssw  ]

Package: libssw0 (1.1-14 and others)

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fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

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Download libssw0

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 1.1-14+b1 20.7 kB56.0 kB [list of files]
arm64 1.1-14+b1 19.1 kB84.0 kB [list of files]
armel 1.1-14+b1 20.2 kB60.0 kB [list of files]
armhf 1.1-14+b1 20.7 kB52.0 kB [list of files]
i386 1.1-14+b1 25.3 kB80.0 kB [list of files]
mips64el 1.1-14+b1 24.9 kB86.0 kB [list of files]
ppc64el 1.1-14+b1 19.7 kB84.0 kB [list of files]
s390x 1.1-14+b1 25.0 kB68.0 kB [list of files]