Package: python-bx (0.8.2-1)

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Debian Resources:

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Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Afif Elghraoui (QA Page)
Steffen Moeller (QA Page)
Michael Crusoe (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

library to manage genomic data and its aligment

The bx-python project is a python library and associated set of scripts to allow for rapid implementation of genome scale analyses. The library contains a variety of useful modules, but the particular strengths are:

 * Classes for reading and working with genome-scale multiple local
 alignments (in MAF, AXT, and LAV formats)
 * Generic data structure for indexing on disk files that contain blocks of
 data associated with intervals on various sequences (used, for example, to
 provide random access to individual alignments in huge files; optimized for
 use over network filesystems)
 * Data structures for working with intervals on sequences
 * "Binned bitsets" which act just like chromosome sized bit arrays, but
 lazily allocate regions and allow large blocks of all set or all unset bits
 to be stored compactly
 * "Intersecter" for performing fast intersection tests that preserve both
 query and target intervals and associated annotation

This package provides the Python 2 library.

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