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[ Source: iqtree  ]

Package: iqtree (2.0.7+dfsg-1 and others)

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efficient phylogenetic software by maximum likelihood

IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others:

 * A novel fast and effective stochastic algorithm to estimate maximum
   likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
   of likelihood while requiring similar amount of computing time (see
   Nguyen et al., 2015)
 * An ultrafast bootstrap approximation to assess branch supports (see
   Minh et al., 2013).
 * A wide range of substitution models for binary, DNA, protein, codon,
   and morphological alignments.
 * Ultrafast model selection for all data types, 10 to 100 times faster
   than jModelTest and ProtTest.
 * Finding best partition scheme like PartitionFinder.
 * Partitioned models with mixed data types for phylogenomic (multi-
   gene) alignments, allowing for separate, proportional, or joint
   branch lengths among genes.
 * Supporting the phylogenetic likelihod library (PLL) (see Flouri et
   al., 2014)

Other Packages Related to iqtree

  • depends
  • recommends
  • suggests
  • enhances

Download iqtree

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 2.0.7+dfsg-1+b1 3,584.6 kB24,820.0 kB [list of files]
i386 2.0.7+dfsg-1+b2 3,153.6 kB22,295.0 kB [list of files]