Package: gmap (2024-05-20+ds-1)

Links for gmap

Debian Resources:

Download Source Package gmap:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Shaun Jackman (QA Page)
Andreas Tille (QA Page)
Alexandre Mestiashvili (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [research-pub.gene.com]

Similar packages:

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Tags: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

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dep: libc6 (>= 2.34)

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dep: zlib1g (>= 1:1.2.6)

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amd64	32,246.6 kB	253,490.0 kB	[list of files]
arm64	6,244.2 kB	58,942.0 kB	[list of files]
armel	4,824.3 kB	44,107.0 kB	[list of files]
armhf	5,383.8 kB	41,971.0 kB	[list of files]
i386	5,559.4 kB	44,303.0 kB	[list of files]
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