[ Source: pairtools ]
Package: python3-pairtools (1.0.3-1 and others)
Links for python3-pairtools
Debian Resources:
Download Source Package pairtools:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end sequences of Hi-C DNA molecules - Sort .pairs files for downstream analyses - Detect, tag and remove PCR/optical duplicates - Generate extensive statistics of Hi-C datasets - Select Hi-C pairs given flexibly defined criteria - Restore .sam alignments from Hi-C pairs
Other Packages Related to python3-pairtools
|
|
|
|
-
- dep: cython3 [hppa, ia64, ppc64, sparc64, x32]
- C-Extensions for Python 3
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.16) [x32]
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3.4) [hppa]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, ppc64, sparc64]
-
- dep: libc6.1 (>= 2.33) [ia64]
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
-
- dep: libgcc-s1 (>= 3.0) [alpha, amd64, arm64, i386, mips64el, ppc64el, riscv64, sh4]
- GCC támogató programkönyvtár
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
-
- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC támogató programkönyvtár
-
- dep: libstdc++6 (>= 11) [not hppa, ia64, ppc64, sparc64, x32]
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11) [ia64, x32]
- dep: python3 (<< 3.12) [hppa, ppc64, sparc64]
- dep: python3 (<< 3.13) [not hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.11~) [not hppa, ia64, ppc64, sparc64, x32]
-
- dep: python3-bioframe [not hppa, ia64, ppc64, sparc64, x32]
- library to enable flexible, scalable operations on genomic interval dataframes
-
- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
-
- dep: python3-nose [hppa, ia64, ppc64, sparc64, x32]
- test discovery and running for Python3 unittest
-
- dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]
- Fast array facility to the Python language (Python 3)
- dep: python3-numpy (>= 1:1.22.0) [not hppa, ia64, ppc64, sh4, sparc64, x32]
- dep: python3-numpy (>= 1:1.25.0) [sh4]
-
- dep: python3-numpy-abi9
- virtual package provided by python3-numpy
-
- dep: python3-pandas [not hppa, ia64, ppc64, sparc64, x32]
- data structures for "relational" or "labeled" data
-
- dep: python3-pysam (>= 0.20.0+ds-3~) [not hppa, ia64, ppc64, sparc64, x32]
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-scipy [not hppa, ia64, ppc64, sparc64, x32]
- scientific tools for Python 3
-
- dep: python3-yaml [not hppa, ia64, ppc64, sparc64, x32]
- YAML parser and emitter for Python3
-
- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)
Download python3-pairtools
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 1.0.3-1 | 207.9 kB | 1,177.0 kB | [list of files] |
amd64 | 1.0.3-1 | 226.4 kB | 1,021.0 kB | [list of files] |
arm64 | 1.0.3-1 | 202.3 kB | 1,043.0 kB | [list of files] |
armel | 1.0.3-1 | 199.0 kB | 903.0 kB | [list of files] |
armhf | 1.0.3-1 | 203.9 kB | 763.0 kB | [list of files] |
hppa (unofficial port) | 0.3.0-3.2+b2 | 144.6 kB | 640.0 kB | [list of files] |
i386 | 1.0.3-1 | 226.5 kB | 1,007.0 kB | [list of files] |
ia64 (unofficial port) | 0.3.0-3.2+b1 | 137.3 kB | 612.0 kB | [list of files] |
m68k (unofficial port) | 1.0.3-1 | 202.5 kB | 923.0 kB | [list of files] |
mips64el | 1.0.3-1 | 194.3 kB | 1,191.0 kB | [list of files] |
ppc64 (unofficial port) | 0.3.0-3.2+b2 | 146.6 kB | 752.0 kB | [list of files] |
ppc64el | 1.0.3-1 | 217.0 kB | 1,171.0 kB | [list of files] |
riscv64 | 1.0.3-1 | 221.6 kB | 871.0 kB | [list of files] |
sh4 (unofficial port) | 1.0.3-1+b1 | 309.0 kB | 1,152.0 kB | [list of files] |
sparc64 (unofficial port) | 0.3.0-3.2+b2 | 125.9 kB | 2,292.0 kB | [list of files] |
x32 (unofficial port) | 0.3.0-3.2+b1 | 121.6 kB | 405.0 kB | [list of files] |