all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: python-pyfaidx  ]

Package: python3-pyfaidx (0.5.5.2-1)

Links for python3-pyfaidx

Screenshot

Debian Resources:

Download Source Package python-pyfaidx:

Maintainers:

External Resources:

Similar packages:

efficient random access to fasta subsequences for Python 3

Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.

This package provides the Python 3 modules to access fasta files.

Other Packages Related to python3-pyfaidx

  • depends
  • recommends
  • suggests
  • enhances

Download python3-pyfaidx

Download for all available architectures
Architecture Package Size Installed Size Files
all 24.7 kB117.0 kB [list of files]