Package: cufflinks (2.2.1+dfsg.1-3 and others) [non-free]

Links for cufflinks

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Download Source Package cufflinks:

Maintainers:

External Resources:

Homepage [cufflinks.cbcb.umd.edu]

Similar packages:

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Works with: Biological Sequence

Other Packages Related to cufflinks

depends

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dep: libboost-serialization1.67.0

serialization library for C++
dep: libboost-system1.67.0

Operating system (e.g. diagnostics support) library
dep: libboost-thread1.67.0

portable C++ multi-threading
dep: libc6 (>= 2.23)

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
dep: libgcc1 (>= 1:4.0) [amd64, armhf]

GCC támogató programkönyvtár

dep: libgcc1 (>= 1:4.2) [i386]

dep: libgcc1 (>= 1:4.5) [arm64]
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: python

interactive high-level object-oriented language (Python2 version)
dep: zlib1g (>= 1:1.2.3.3)

tömörítő könyvtár - futásidejű

enh: tophat

fast splice junction mapper for RNA-Seq reads

Download cufflinks

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
amd64	2.2.1+dfsg.1-3+b1	1,467.3 kB	10,248.0 kB	[list of files]
arm64	2.2.1+dfsg.1-3+b1	1,365.4 kB	9,782.0 kB	[list of files]
armhf	2.2.1+dfsg.1-3+b1	1,079.9 kB	6,034.0 kB	[list of files]
i386	2.2.1+dfsg.1-3+b1	1,494.9 kB	10,392.0 kB	[list of files]