Paquet : jellyfish (2.3.0-12) [debports]
Liens pour jellyfish
Ressources Debian :
Télécharger le paquet source :
IntrouvableResponsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
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un paquet virtuel est également fourni par libc6.1-udeb
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Télécharger jellyfish
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
ia64 (portage non officiel) | 847,7 ko | 5 022,0 ko | [liste des fichiers] |