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[ Paquet source : vcfanno  ]

Paquet : vcfanno (0.3.5+ds-2 et autres)

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annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Autres paquets associés à vcfanno

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Télécharger pour toutes les architectures proposées
Architecture Version Taille du paquet Espace occupé une fois installé Fichiers
amd64 0.3.5+ds-2+b9 2 622,1 ko8 044,0 ko [liste des fichiers]
arm64 0.3.5+ds-2+b9 2 234,5 ko7 560,0 ko [liste des fichiers]
armhf 0.3.5+ds-2+b9 2 306,5 ko7 827,0 ko [liste des fichiers]
i386 0.3.5+ds-2+b9 2 498,8 ko7 784,0 ko [liste des fichiers]
ppc64el 0.3.5+ds-2+b9 2 228,5 ko7 880,0 ko [liste des fichiers]
riscv64 0.3.5+ds-2+b9 2 324,1 ko7 624,0 ko [liste des fichiers]
s390x 0.3.5+ds-2+b9 2 385,6 ko8 520,0 ko [liste des fichiers]