Paquet : vcfanno (0.3.5+ds-3)

Liens pour vcfanno

Ressources Debian :

Télécharger le paquet source vcfanno :

Responsables :

Ressources externes :

Page d'accueil [github.com]

Paquets similaires :

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Autres paquets associés à vcfanno

dépendances

recommandations

suggestions

enhances

dep: libc6 (>= 2.34)

bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb

Télécharger vcfanno

Télécharger pour toutes les architectures proposées
Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	2 623,7 ko	8 047,0 ko	[liste des fichiers]
arm64	2 234,6 ko	7 559,0 ko	[liste des fichiers]
armhf	2 306,1 ko	7 826,0 ko	[liste des fichiers]
i386	2 497,5 ko	7 783,0 ko	[liste des fichiers]
ppc64el	2 228,1 ko	7 879,0 ko	[liste des fichiers]
riscv64	2 323,4 ko	7 623,0 ko	[liste des fichiers]
s390x	2 387,1 ko	8 519,0 ko	[liste des fichiers]