Paquet : profphd (1.0.42-3)

Liens pour profphd

Ressources Debian :

Télécharger le paquet source profphd :

Responsables :

Ressources externes :

Page d'accueil [predictprotein.org]

Paquets similaires :

secondary structure and solvent accessibility predictor

This package provides prof(1), the protein secondary structure, accessibility and transmembrane helix predictor from Burkhard Rost. Prediction is either done from protein sequence alone or from an alignment - the latter should be used for optimal performance.

How well does prof(1) perform?

 * Secondary structure is predicted at an expected average accuracy > 72% for
   the three states helix, strand and loop.

 * Solvent accessibility is predicted at a correlation coefficient
   (correlation between experimentally observed and predicted relative
   solvent accessibility) of 0.54

 * Transmembrane helix prediction has an expected per-residue accuracy of
   about 95%.  The number of false positives, i.e., transmembrane helices
   predicted in globular proteins, is about 2%.

Autres paquets associés à profphd

dépendances

recommandations

suggestions

enhances

dep: librg-utils-perl

analyseurs syntaxiques et les utilitaires de conversion de format, utilisés par profphd
dep: perl

langage de rapports et d'extractions pratiques de Larry Wall
dep: profnet-prof

neural network architecture for profacc
dep: profphd-net

architecture de réseaux de neurones pour le paquet profphd
dep: profphd-utils

profphd helper utilities convert_seq and filter_hssp

rec: pp-popularity-contest

PredictProtein popularity contest

Télécharger profphd

Télécharger pour toutes les architectures proposées
Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	4 404,7 ko	26 199,0 ko	[liste des fichiers]