Paquet : idba (1.1.3-3)
Liens pour idba
Ressources Debian :
- Rapports de bogues
- Developer Information
- Journal des modifications Debian
- Fichier de licence
- Suivis des correctifs pour Debian
Télécharger le paquet source idba :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
iterative De Bruijn Graph short read assemblers
IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.
This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.
IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.
Autres paquets associés à idba
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- dep: libc6 (>= 2.14) [amd64]
- bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf, i386]
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- dep: libgcc1 (>= 1:3.0) [amd64, arm64]
- bibliothèque de prise en charge de GCC
- dep: libgcc1 (>= 1:3.5) [armhf]
- dep: libgcc1 (>= 1:7) [i386]
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- dep: libgomp1 (>= 4.9)
- bibliothèque GCC pour OpenMP (GOMP)
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- dep: libstdc++6 (>= 5.2)
- bibliothèque standard C++ de GNU v3
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- dep: python
- langage interactif de haut niveau orienté objet (version Python2)
Télécharger idba
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 371,8 ko | 2 571,0 ko | [liste des fichiers] |
| arm64 | 333,1 ko | 2 191,0 ko | [liste des fichiers] |
| armhf | 329,5 ko | 1 575,0 ko | [liste des fichiers] |
| i386 | 417,7 ko | 2 831,0 ko | [liste des fichiers] |