Paquet : libseqlib2 (1.2.0+dfsg-9)
Liens pour libseqlib2
Ressources Debian :
- Rapports de bogues
- Developer Information
- Journal des modifications Debian
- Fichier de licence
- Suivis des correctifs pour Debian
Télécharger le paquet source libseqlib :
- [libseqlib_1.2.0+dfsg-9.dsc]
- [libseqlib_1.2.0+dfsg.orig.tar.xz]
- [libseqlib_1.2.0+dfsg-9.debian.tar.xz]
Responsables :
- Debian Med Packaging Team (Page QA, Archive du courrier électronique)
- Andreas Tille (Page QA)
- Étienne Mollier (Page QA)
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
Autres paquets associés à libseqlib2
|
|
|
|
-
- dep: libc6 (>= 2.33)
- bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
-
- dep: libfml0 (>= 0.1+git20190320.b499514)
- library for assembling Illumina short reads in small regions
-
- dep: libgcc-s1 (>= 3.0) [non armel, armhf, mipsel]
- bibliothèque de prise en charge de GCC
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [mipsel]
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libjsoncpp25 (>= 1.9.5)
- library for reading and writing JSON for C++
-
- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 11)
- bibliothèque standard C++ de GNU v3
-
- dep: zlib1g (>= 1:1.1.4)
- Bibliothèque de compression - binaires
Télécharger libseqlib2
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 158,0 ko | 553,0 ko | [liste des fichiers] |
| arm64 | 137,6 ko | 468,0 ko | [liste des fichiers] |
| armel | 127,8 ko | 467,0 ko | [liste des fichiers] |
| armhf | 132,5 ko | 339,0 ko | [liste des fichiers] |
| i386 | 165,4 ko | 499,0 ko | [liste des fichiers] |
| mips64el | 138,7 ko | 557,0 ko | [liste des fichiers] |
| mipsel | 139,6 ko | 551,0 ko | [liste des fichiers] |
| ppc64el | 162,4 ko | 597,0 ko | [liste des fichiers] |
| s390x | 135,7 ko | 496,0 ko | [liste des fichiers] |