Paketti: libtfbs-perl (0.7.1+ds-4 ja muut)

Links for libtfbs-perl

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Kotisivu [tfbs.genereg.net]

Samankaltaisia paketteja:

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Tagit: Software Development: Perl Development, Kirjastot, Field: field::biology, field::biology:bioinformatics, Implemented in: C, implemented-in::perl, interface::commandline, Role: Development Library, Program

Muut pakettiin libtfbs-perl liittyvät paketit

depends

recommends

suggests

enhances

dep: bioperl

Perl tools for computational molecular biology
dep: libc6 (>= 2.38)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libdbi-perl

Perl Database Interface (DBI)
dep: libwww-perl

simple and consistent interface to the world-wide web
dep: pdl (>= 1:2.093-1+b1) [ei arm64, armhf, riscv64]

perl data language: Perl extensions for numerics

dep: pdl (>= 1:2.100-1) [arm64, armhf, riscv64]
dep: pdlapi-20

näennäispaketti, jonka toteuttaa pdl
dep: perl (>= 5.40.0-6) [ei arm64, armhf, riscv64]

Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

dep: perl (>= 5.40.1-2) [arm64, armhf, riscv64]
dep: perlapi-5.40.0 [ei arm64, armhf, riscv64]

näennäispaketti, jonka toteuttaa perl-base
dep: perlapi-5.40.1 [arm64, armhf, riscv64]

näennäispaketti, jonka toteuttaa perl-base

rec: libgd-gd2-perl

näennäispaketti, jonka toteuttaa libgd-perl

tai libgd-gd2-noxpm-perl

näennäispaketti, jonka toteuttaa libgd-perl

Imuroi libtfbs-perl

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	0.7.1+ds-4+b1	216.4 kt	981.0 kt	[tiedostoluettelo]
arm64	0.7.1+ds-4+b2	218.6 kt	1,029.0 kt	[tiedostoluettelo]
armel	0.7.1+ds-4+b1	217.6 kt	981.0 kt	[tiedostoluettelo]
armhf	0.7.1+ds-4+b2	217.6 kt	1,029.0 kt	[tiedostoluettelo]
i386	0.7.1+ds-4+b1	217.0 kt	981.0 kt	[tiedostoluettelo]
ppc64el	0.7.1+ds-4+b1	217.3 kt	1,029.0 kt	[tiedostoluettelo]
riscv64	0.7.1+ds-4+b2	217.6 kt	977.0 kt	[tiedostoluettelo]
s390x	0.7.1+ds-4+b1	216.5 kt	981.0 kt	[tiedostoluettelo]