Paketti: miniasm (0.3+dfsg-4 ja muut)

Links for miniasm

Debian-palvelut:

Imuroi lähdekoodipaketti miniasm:

Ylläpitäjät:

External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tagit: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Muut pakettiin miniasm liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

rec: minimap

tool for approximate mapping of long biosequences such as DNA reads

Imuroi miniasm

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
riscv64	0.3+dfsg-4+b1	29.9 kt	60.0 kt	[tiedostoluettelo]