[ Source: srst2 ]
Paketti: srst2 (0.2.0-11)
Links for srst2
Debian-palvelut:
Imuroi lähdekoodipaketti srst2:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Andreas Tille (Laadunvalvontasivu)
- Étienne Mollier (Laadunvalvontasivu)
External Resources:
- Kotisivu [katholt.github.io]
Samankaltaisia paketteja:
Short Read Sequence Typing for Bacterial Pathogens
This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Muut pakettiin srst2 liittyvät paketit
|
|
|
|
-
- dep: bowtie2
- ultrafast memory-efficient short read aligner
-
- dep: cd-hit
- suite of programs designed to quickly group sequences
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- rec: python3-rpy2
- Python3 interface to the GNU R language and environment (version 2)
Imuroi srst2
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| mips64el | 59.6 kt | 254.0 kt | [tiedostoluettelo] |