Paketti: pycoqc (2.5.2+dfsg-3)

Links for pycoqc

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Imuroi lähdekoodipaketti pycoqc:

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Kotisivu [github.com]

Samankaltaisia paketteja:

computes metrics and generates Interactive QC plots

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+

Muut pakettiin pycoqc liittyvät paketit

depends

recommends

suggests

enhances

dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-h5py

general-purpose Python interface to hdf5
dep: python3-h5py-serial

general-purpose Python interface to hdf5 (Python 3 serial)
dep: python3-jinja2

small but fast and easy to use stand-alone template engine
dep: python3-numpy

Fast array facility to the Python language (Python 3)
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-plotly (>= 4.1.0)

Python 3 plotting library for publication-quality graphs
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-tqdm

fast, extensible progress bar for Python 3 and CLI tool

Imuroi pycoqc

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	35.4 kt	194.0 kt	[tiedostoluettelo]