Paketti: libtfbs-perl (0.7.1+ds-3) [debports]
Links for libtfbs-perl
Debian-palvelut:
Imuroi lähdekoodipaketti :
Ei löytynytYlläpitäjät:
External Resources:
- Kotisivu [tfbs.genereg.net]
Samankaltaisia paketteja:
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
Muut pakettiin libtfbs-perl liittyvät paketit
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- dep: bioperl
- Perl tools for computational molecular biology
-
- dep: libc6 (>= 2.7)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libwww-perl
- simple and consistent interface to the world-wide web
-
- dep: pdl (>= 1:2.088-2)
- perl data language: Perl extensions for numerics
-
- dep: perl (>= 5.38.2-3.2+b1)
- Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
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- dep: perlapi-5.38.2t64
- näennäispaketti, jonka toteuttaa perl-base
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- rec: libgd-gd2-perl
- näennäispaketti, jonka toteuttaa libgd-perl
- tai libgd-gd2-noxpm-perl
- näennäispaketti, jonka toteuttaa libgd-perl
Imuroi libtfbs-perl
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| hppa (epävirallinen siirros) | 217.1 kt | 980.0 kt | [tiedostoluettelo] |