Paketti: r-bioc-tximeta (1.20.3+dfsg-1)

Links for r-bioc-tximeta

Debian-palvelut:

Imuroi lähdekoodipaketti r-bioc-tximeta:

Ylläpitäjät:

External Resources:

Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

Transcript Quantification Import with Automatic Metadata

Transcript quantification import from Salmon and alevin with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.

Muut pakettiin r-bioc-tximeta liittyvät paketit

depends

recommends

suggests

enhances

dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.18

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-bioc-annotationdbi

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-annotationhub

GNU R client to access AnnotationHub resources
dep: r-bioc-biocfilecache

GNU R management of files across sessions
dep: r-bioc-biostrings

GNU R string objects representing biological sequences
dep: r-bioc-ensembldb

GNU R utilities to create and use an Ensembl based annotation database
dep: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
dep: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-bioc-tximport

transcript-level estimates for biological sequencing
dep: r-cran-jsonlite

Robust, High Performance JSON Parser and Generator for R
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-tibble

GNU R Simple Data Frames

sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-edger

Empirical analysis of digital gene expression data in R
sug: r-bioc-fishpond

Differential transcript and gene expression with inferential replicates
sug: r-bioc-limma

linear models for microarray data
sug: r-bioc-tximportdata

GNU R various transcript abundance quantifiers
sug: r-cran-devtools

Tools to Make Developing R Packages Easier
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Imuroi r-bioc-tximeta

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	612.7 kt	858.0 kt	[tiedostoluettelo]