Paketti: r-bioc-monocle (2.30.0-1) [debports]

Links for r-bioc-monocle

Debian-palvelut:

Vikailmoitukset

Imuroi lähdekoodipaketti :

Ei löytynyt

Ylläpitäjät:

External Resources:

Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

Muut pakettiin r-bioc-monocle liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6.1 (>= 2.11)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6.1-udeb
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libstdc++6 (>= 13.1)

GNU standardi C++ -kirjasto, versio 3
dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.18

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocviews

Categorized views of R package repositories
dep: r-bioc-hsmmsinglecell (>= 0.101.5)

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts
dep: r-bioc-limma

linear models for microarray data
dep: r-cran-cluster

GNU R package for cluster analysis by Rousseeuw et al
dep: r-cran-combinat

GNU R package with utilities for combinatorics
dep: r-cran-ddrtree (>= 0.1.4)

GNU R learning principal graphs with DDRTree
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-fastica

GNU R package for ICA and Projection Pursuit
dep: r-cran-ggplot2 (>= 1.0.0)

implementation of the Grammar of Graphics
dep: r-cran-igraph (>= 1.0.1)

GNU R network analysis and visualization
dep: r-cran-irlba (>= 2.0.0)

GNU R fast truncated SVD, PCA and symmetric eigendecomposition
dep: r-cran-leidenbase (>= 0.1.9)

GNU R and C/C++ Wrappers to Run the Leiden find_partition() Function
dep: r-cran-mass

GNU R package of Venables and Ripley's MASS
dep: r-cran-matrix (>= 1.2-6)

GNU R package of classes for dense and sparse matrices
dep: r-cran-matrixstats

GNU R methods that apply to rows and columns of a matrix
dep: r-cran-pheatmap

GNU R package to create pretty heatmaps
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: r-cran-proxy

GNU R distance and similarity measures
dep: r-cran-qlcmatrix

GNU R utility sparse matrix functions for quantitative language
dep: r-cran-rann (>= 2.5)

Fast Nearest Neighbour Search Using L2 Metric
dep: r-cran-rcpp (>= 0.12.0)

GNU R package for Seamless R and C++ Integration
dep: r-cran-reshape2

Flexibly reshape data: a reboot of the reshape package
dep: r-cran-rtsne

GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
dep: r-cran-slam

GNU R sparse lighweight arrays and matrices package
dep: r-cran-stringr

Make it easier to work with strings
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-vgam (>= 1.0-6)

GNU R package for estimating vector generalized additive models
dep: r-cran-viridis

GNU R package for color maps from matplotlib

sug: r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
sug: r-cran-hmisc

GNU R miscellaneous functions by Frank Harrell
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-seurat

Tools for Single Cell Genomics
sug: r-cran-testthat

GNU R testsuite

Imuroi r-bioc-monocle

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