Paketti: cat-bat (5.3-2) [debports]

Links for cat-bat

Debian-palvelut:

Vikailmoitukset

Imuroi lähdekoodipaketti :

Ei löytynyt

Ylläpitäjät:

External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.

Muut pakettiin cat-bat liittyvät paketit

depends

recommends

suggests

enhances

dep: diamond-aligner

accelerated BLAST compatible local sequence aligner
dep: prodigal

Microbial (bacterial and archaeal) gene finding program
dep: python3

interactive high-level object-oriented language (default python3 version)

Imuroi cat-bat

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	38.5 kt	199.0 kt	[tiedostoluettelo]