[ Source: allelecount ]
Paketti: liballelecount-perl (4.3.0-2)
Links for liballelecount-perl
Debian-palvelut:
Imuroi lähdekoodipaketti allelecount:
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
Perl interface to NGS copy number algorithms
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).
The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.
This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype.
Muut pakettiin liballelecount-perl liittyvät paketit
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- dep: libconst-fast-perl
- facility for creating read-only scalars, arrays, and hashes
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- dep: libdevel-cover-perl
- Perl tool for determining code coverage metrics
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- dep: libfile-slurp-perl
- single call read & write file routines
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- dep: libfile-which-perl
- Perl module for searching paths for executable programs
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- dep: libipc-system-simple-perl
- Perl module to run commands simply, with detailed diagnostics
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- dep: libjson-perl
- module for manipulating JSON-formatted data
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- dep: libpod-coverage-perl
- checker for comprehensiveness of perl module documentation
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- dep: libtest-fatal-perl
- module for testing code with exceptions
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- dep: libtry-tiny-perl
- module providing minimalistic try/catch
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- dep: perl
- Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
Imuroi liballelecount-perl
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 24.4 kt | 81.0 kt | [tiedostoluettelo] |