Paketti: python-freecontact (1.1-4)
Links for python-freecontact
Debian-palvelut:
Imuroi lähdekoodipaketti python-freecontact:
- [python-freecontact_1.1-4.dsc]
- [python-freecontact_1.1.orig.tar.gz]
- [python-freecontact_1.1-4.debian.tar.xz]
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Laszlo Kajan (Laadunvalvontasivu)
- Andreas Tille (Laadunvalvontasivu)
- Alexandre Mestiashvili (Laadunvalvontasivu)
External Resources:
- Kotisivu [rostlab.org]
Samankaltaisia paketteja:
fast protein contact predictor - binding for Python
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the Python binding.
Muut pakettiin python-freecontact liittyvät paketit
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- dep: libboost-python1.67.0
- Boost.Python Library
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- dep: libc6 (>= 2.17) [arm64]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.4) [ei arm64]
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- dep: libfreecontact0v5
- fast protein contact predictor library
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- dep: libgcc1 (>= 1:3.0) [ei armhf]
- GCC:n apukirjasto
- dep: libgcc1 (>= 1:3.5) [armhf]
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- dep: libstdc++6 (>= 5)
- GNU standardi C++ -kirjasto, versio 3
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- dep: python
- interactive high-level object-oriented language (Python2 version)
- dep: python (<< 2.8)
- dep: python (>= 2.7~)
Imuroi python-freecontact
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 79.7 kt | 173.0 kt | [tiedostoluettelo] |
| arm64 | 77.9 kt | 177.0 kt | [tiedostoluettelo] |
| armhf | 75.6 kt | 140.0 kt | [tiedostoluettelo] |
| i386 | 81.5 kt | 172.0 kt | [tiedostoluettelo] |