Paketti: bio-eagle (2.4.1-1)

Links for bio-eagle

Debian-palvelut:

Imuroi lähdekoodipaketti bio-eagle:

Ylläpitäjät:

External Resources:

Kotisivu [data.broadinstitute.org]

Samankaltaisia paketteja:

Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: Analysing

Muut pakettiin bio-eagle liittyvät paketit

depends

recommends

suggests

enhances

dep: libboost-iostreams1.67.0

Boost.Iostreams -kirjasto
dep: libboost-program-options1.67.0

program options library for C++
dep: libc6 (>= 2.27)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc1 (>= 1:3.0)

GCC:n apukirjasto
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libhts2 (>= 1.4.1)

C library for high-throughput sequencing data formats
dep: libopenblas-base

Optimized BLAS (linear algebra) library (shared library)
dep: libstdc++6 (>= 5.2)

GNU standardi C++ -kirjasto, versio 3
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

rec: med-config (>= 2.1)

Debian Med general config package

sug: bio-eagle-examples

Examples for bio-eagle

Imuroi bio-eagle

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