[ Source: prime-phylo ]
Paketti: prime-phylo (1.0.11-7 ja muut)
Links for prime-phylo
Debian-palvelut:
Imuroi lähdekoodipaketti prime-phylo:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Erik Sjolund (Laadunvalvontasivu)
- Andreas Tille (Laadunvalvontasivu)
External Resources:
- Kotisivu [prime.sbc.su.se]
Samankaltaisia paketteja:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Muut pakettiin prime-phylo liittyvät paketit
|
|
|
|
-
- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- tai libblas.so.3
- näennäispaketti, jonka toteuttaa libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base
-
- dep: libboost-mpi1.67.0
- C++ interface to the Message Passing Interface (MPI)
-
- dep: libboost-serialization1.67.0
- serialization library for C++
-
- dep: libc6 (>= 2.23)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
-
- dep: libgcc1 (>= 1:4.5)
- GCC:n apukirjasto
-
- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- tai liblapack.so.3
- näennäispaketti, jonka toteuttaa libatlas3-base, liblapack3, libopenblas-base
-
- dep: libopenmpi3
- high performance message passing library -- shared library
-
- dep: libstdc++6 (>= 5.2)
- GNU standardi C++ -kirjasto, versio 3
-
- dep: libxml2 (>= 2.7.4)
- XML-kirjasto Gnomelle
-
- dep: perl
- Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
-
- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- sug: mrbayes
- Bayesian Inference of Phylogeny
-
- sug: muscle
- Multiple alignment program of protein sequences
-
- sug: njplot
- phylogenetic tree drawing program
-
- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
-
- sug: python-biopython
- Python library for bioinformatics (implemented in Python 2)
-
- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- sug: treeviewx
- Displays and prints phylogenetic trees
Imuroi prime-phylo
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| arm64 | 1.0.11-7+b1 | 744.5 kt | 3,279.0 kt | [tiedostoluettelo] |