Paketti: predictprotein (1.1.08-1)

Links for predictprotein

Debian-palvelut:

Imuroi lähdekoodipaketti predictprotein:

Ylläpitäjät:

External Resources:

Kotisivu [www.predictprotein.org]

Samankaltaisia paketteja:

suite of protein sequence analysis tools

PredictProtein is a sequence analysis suite providing prediction of protein structure and function.

PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations:

 * secondary structure
 * solvent accessibility
 * multiple sequence alignments
 * PROSITE sequence motifs
 * low-complexity regions
 * nuclear localisation signals
 * regions lacking regular structure (NORS)
 * unstructured loops
 * transmembrane helices
 * transmembrane beta barrels
 * coiled-coil regions
 * disulfide-bonds
 * disordered regions
 * B-value flexibility
 * protein-protein interaction sites
 * Gene Ontology terms

Muut pakettiin predictprotein liittyvät paketit

depends

recommends

suggests

enhances

dep: bioperl

Perl tools for computational molecular biology
dep: blast2

transitional dummy package to ncbi-blast+-legacy
dep: disulfinder

cysteines disulfide bonding state and connectivity predictor
dep: hmmer

profile hidden Markov models for protein sequence analysis
dep: hmmer2

profile hidden Markov models for protein sequence analysis
dep: librg-exception-perl

RG::Exception Perl module
dep: librg-utils-perl

parsers and format conversion utilities used by (e.g.) profphd
dep: make

utility for directing compilation
dep: metastudent

predictor of Gene Ontology terms from protein sequence
dep: ncbi-seg

tool to mask segments of low compositional complexity in amino acid sequences
dep: ncoils

coiled coil secondary structure prediction
dep: norsnet

tool to identify unstructured loops in proteins
dep: norsp

predictor of non-regular secondary structure
dep: perl

Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
dep: predictnls

prediction and analysis of protein nuclear localization signals
dep: profbval

predictor of flexible/rigid protein residues from sequence
dep: profisis

prediction of protein-protein interaction sites from sequence
dep: profphd

secondary structure and solvent accessibility predictor
dep: proftmb

per-residue prediction of bacterial transmembrane beta barrels
dep: reprof

protein secondary structure and accessibility predictor

sug: pp-cache-mgr (>= 1.0.3)

Paketti ei saatavilla
sug: pp-popularity-contest

PredictProtein popularity contest
sug: predictprotein-nonfree

Paketti ei saatavilla

Imuroi predictprotein

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	57.5 kt	171.0 kt	[tiedostoluettelo]