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[ Source: pbgenomicconsensus ]
Paketti: python-pbgenomicconsensus (2.3.2-5)
Links for python-pbgenomicconsensus
Debian-palvelut:
Imuroi lähdekoodipaketti pbgenomicconsensus:
- [pbgenomicconsensus_2.3.2-5.dsc]
- [pbgenomicconsensus_2.3.2.orig.tar.gz]
- [pbgenomicconsensus_2.3.2-5.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
Pacific Biosciences variant and consensus caller (Python 2)
The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides.
This package is part of the SMRTAnalysis suite and provides the Python 2 backend library.
Muut pakettiin python-pbgenomicconsensus liittyvät paketit
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-h5py
- general-purpose Python interface to hdf5 (Python 2)
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- dep: python-numpy
- Numerical Python adds a fast array facility to the Python language
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- dep: python-pbcommand
- common command-line interface for Pacific Biosciences analysis modules
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- dep: python-pbconsensuscore
- algorithms for PacBio multiple sequence consensus -- Python 2
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- dep: python-pbcore
- Python 2 library for processing PacBio data files
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- sug: python-consensuscore2
- generate consensus sequences for PacBio data -- Python 2
Imuroi python-pbgenomicconsensus
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 46.1 kt | 265.0 kt | [tiedostoluettelo] |