[ Source: lumpy-sv ]
Paketti: lumpy-sv (0.3.1+dfsg-5)
Links for lumpy-sv
Debian-palvelut:
Imuroi lähdekoodipaketti lumpy-sv:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Andreas Tille (Laadunvalvontasivu)
- Nilesh Patra (Laadunvalvontasivu)
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
general probabilistic framework for structural variant discovery
LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.
Muut pakettiin lumpy-sv liittyvät paketit
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- dep: bamkit
- tools for common BAM file manipulations
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.29)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
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- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU standardi C++ -kirjasto, versio 3
- dep: libstdc++6 (>= 9) [ei armel, armhf]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samblaster
- marks duplicates, extracts discordant/split reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: sambamba
- tools for working with SAM/BAM data
Imuroi lumpy-sv
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 181.5 kt | 631.0 kt | [tiedostoluettelo] |
| arm64 | 159.7 kt | 563.0 kt | [tiedostoluettelo] |
| armel | 153.3 kt | 545.0 kt | [tiedostoluettelo] |
| armhf | 161.4 kt | 433.0 kt | [tiedostoluettelo] |
| i386 | 198.4 kt | 673.0 kt | [tiedostoluettelo] |
| mips64el | 167.4 kt | 720.0 kt | [tiedostoluettelo] |
| mipsel | 175.8 kt | 708.0 kt | [tiedostoluettelo] |
| ppc64el | 183.2 kt | 803.0 kt | [tiedostoluettelo] |