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[ Source: phybin  ]

Paketti: phybin (0.3-6)

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binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

Muut pakettiin phybin liittyvät paketit

  • depends
  • recommends
  • suggests
  • enhances

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amd64 1,614.5 kt11,976.0 kt [tiedostoluettelo]
arm64 4,125.4 kt30,322.0 kt [tiedostoluettelo]
armel 4,407.2 kt28,552.0 kt [tiedostoluettelo]
armhf 4,444.7 kt28,524.0 kt [tiedostoluettelo]
i386 4,957.4 kt37,630.0 kt [tiedostoluettelo]
mips64el 5,284.0 kt58,772.0 kt [tiedostoluettelo]
mipsel 3,528.3 kt40,639.0 kt [tiedostoluettelo]
ppc64el 3,498.6 kt38,137.0 kt [tiedostoluettelo]
s390x 7,543.2 kt53,627.0 kt [tiedostoluettelo]