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[ Source: phybin  ]

Paketti: phybin (0.3-6)

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binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

Muut pakettiin phybin liittyvät paketit

  • depends
  • recommends
  • suggests
  • enhances

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