Paketti: libsnpeff-java (5.1+d+dfsg-3)

Links for libsnpeff-java

Debian-palvelut:

Imuroi lähdekoodipaketti snpeff:

Ylläpitäjät:

External Resources:

Kotisivu [pcingola.github.io]

Samankaltaisia paketteja:

genetic variant annotation and effect prediction toolbox - lib

SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).

The inputs are predicted variants (SNPs, insertions, deletions and MNPs). The input file is usually obtained as a result of a sequencing experiment, and it is usually in variant call format (VCF).

SnpEff analyzes the input variants. It annotates the variants and calculates the effects they produce on known genes (e.g. amino acid changes).

This package contains the library.

Muut pakettiin libsnpeff-java liittyvät paketit

depends

recommends

suggests

enhances

dep: junit5

JUnit regression test framework for Java
dep: libapfloat-java (>= 1.10.1)

high performance arbitrary precision arithmetic library for Java
dep: libbiojava6-java

Java API to biological data and applications (version 6)
dep: libcharts4j-java (>= 1.3)

free, lightweight charts and graphs Java API
dep: libcommons-cli-java (>= 1.5.0)

Command line arguments and options parsing library
dep: libcommons-codec-java (>= 1.15)

encoder and decoders such as Base64 and hexadecimal codec
dep: libcommons-io-java (>= 2.11.0)

Common useful IO related classes
dep: libcommons-math3-java (>= 3.6.1)

Java lightweight mathematics and statistics components
dep: libdistlib-java (>= 1.0)

Java library of statistical distribution functions
dep: libfreemarker-java

template engine written in Java
dep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
dep: libtrove3-java

high performance collections for java

sug: libsnpeff-java-doc

Documentation for Snp Effect

Imuroi libsnpeff-java

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	2,099.5 kt	19,874.0 kt	[tiedostoluettelo]