Paketti: libfreecontact0v5 (1.0.21-13)
Links for libfreecontact0v5
Debian-palvelut:
Imuroi lähdekoodipaketti freecontact:
Ylläpitäjät:
External Resources:
- Kotisivu [rostlab.org]
Samankaltaisia paketteja:
fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the shared library implementing freecontact.
Muut pakettiin libfreecontact0v5 liittyvät paketit
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- tai libblas.so.3
- näennäispaketti, jonka toteuttaa libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libc6 (>= 2.34)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [ei armel, armhf]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgfortran5 (>= 8)
- Runtime library for GNU Fortran applications
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- tai liblapack.so.3
- näennäispaketti, jonka toteuttaa libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libstdc++6 (>= 11)
- GNU standardi C++ -kirjasto, versio 3
Imuroi libfreecontact0v5
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 74.3 kt | 194.0 kt | [tiedostoluettelo] |
| arm64 | 66.0 kt | 217.0 kt | [tiedostoluettelo] |
| armel | 57.2 kt | 153.0 kt | [tiedostoluettelo] |
| armhf | 57.8 kt | 121.0 kt | [tiedostoluettelo] |
| i386 | 64.3 kt | 173.0 kt | [tiedostoluettelo] |
| mips64el | 65.0 kt | 224.0 kt | [tiedostoluettelo] |
| mipsel | 66.5 kt | 223.0 kt | [tiedostoluettelo] |
| ppc64el | 81.1 kt | 218.0 kt | [tiedostoluettelo] |
| s390x | 67.3 kt | 198.0 kt | [tiedostoluettelo] |