Paketti: tree-ppuzzle (5.3~rc16+dfsg-9)

Links for tree-ppuzzle

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Imuroi lähdekoodipaketti tree-puzzle:

Ylläpitäjät:

External Resources:

Kotisivu [www.tree-puzzle.de]

Samankaltaisia paketteja:

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Muut pakettiin tree-ppuzzle liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libopenmpi3 (>= 4.1.2)

high performance message passing library -- shared library
dep: libsprng2

SPRNG Scalable Parallel RNG library -- library package
dep: openmpi-bin

high performance message passing library -- binaries

rec: tree-puzzle-doc

Reconstruction of phylogenetic trees by maximum likelihood (doc)

sug: phylip

package of programs for inferring phylogenies
sug: treetool

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