Paketti: parsnp (1.7.4+dfsg-2)

Links for parsnp

Debian-palvelut:

Imuroi lähdekoodipaketti parsnp:

Ylläpitäjät:

External Resources:

Kotisivu [harvest.readthedocs.org]

Samankaltaisia paketteja:

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

Muut pakettiin parsnp liittyvät paketit

depends

recommends

suggests

enhances

dep: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
dep: harvest-tools

archiving and postprocessing for reference-compressed genomic multi-alignments
dep: libc6 (>= 2.34)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libmuscle1 (>= 3.7+4565)

multiple alignment library for protein sequences
dep: libstdc++6 (>= 11)

GNU standardi C++ -kirjasto, versio 3
dep: mummer

Efficient sequence alignment of full genomes
dep: phipack

PHI test and other tests of recombination
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-numpy

Fast array facility to the Python 3 language
dep: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees

rec: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
i386	194.3 kt	1,931.0 kt	[tiedostoluettelo]