[ Source: cutesv ]
Paketti: cutesv (2.0.2-1)
Links for cutesv
Debian-palvelut:
Imuroi lähdekoodipaketti cutesv:
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Andreas Tille (Laadunvalvontasivu)
- Steffen Moeller (Laadunvalvontasivu)
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
comprehensive discovery of structural variations of genomic sequences
Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads.
cuteSV is a sensitive, fast and scalable long-read-based SV detection approach. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. Benchmarks on real Pacific Biosciences (PacBio) and Oxford Nanopore Technology (ONT) datasets demonstrate that cuteSV has better yields and scalability than state-of-the-art tools.
Muut pakettiin cutesv liittyvät paketit
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-cigar
- manipulate SAM cigar strings
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-vcf
- Variant Call Format (VCF) parser for Python 3
Imuroi cutesv
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 32.2 kt | 191.0 kt | [tiedostoluettelo] |